J3_9TNL_023

3D structure

PDB id

9TNL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9TNL|1|a|U|686, 9TNL|1|a|A|792, 9TNL|1|a|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TNL_023 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1717

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.3

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

11

Unit IDs

9TNL|1|a|U|683
9TNL|1|a|G|684
9TNL|1|a|A|685
9TNL|1|a|U|686
9TNL|1|a|C|687
9TNL|1|a|U|688
9TNL|1|a|A|689
*
9TNL|1|a|U|773
9TNL|1|a|G|774
9TNL|1|a|G|775
*
9TNL|1|a|C|791
9TNL|1|a|A|792
9TNL|1|a|A|793
9TNL|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2