J3_9TQA_001

3D structure

PDB id

9TQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TQA_001 not in the Motif Atlas

Geometric match to J3_8B0X_001

Geometric discrepancy: 0.0427

The information below is about J3_8B0X_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.3

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9TQA|1|A|G|46
9TQA|1|A|C|47
*
9TQA|1|A|G|361
9TQA|1|A|G|362
9TQA|1|A|A|363
9TQA|1|A|A|364
9TQA|1|A|U|365
9TQA|1|A|A|366
9TQA|1|A|U|367
*
9TQA|1|A|A|393
9TQA|1|A|G|394
9TQA|1|A|C|395

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain P

Small ribosomal subunit protein bS16