J3_9TQA_008

3D structure

PDB id

9TQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TQA_008 not in the Motif Atlas

Homologous match to J3_6CZR_019

Geometric discrepancy: 0.1567

The information below is about J3_6CZR_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TQA|1|A|U|943
9TQA|1|A|G|944
9TQA|1|A|G|945
9TQA|1|A|A|946
*
9TQA|1|A|U|1235
9TQA|1|A|A|1236
9TQA|1|A|C|1237
*
9TQA|1|A|G|1337
9TQA|1|A|G|1338
9TQA|1|A|A|1339
9TQA|1|A|A|1340

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain M

Small ribosomal subunit protein uS13

Chain Z

Transfer RNA; tRNA