J3_9TV2_002

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9TV2|1|L5|C|216, 9TV2|1|L5|C|217, 9TV2|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TV2|1|L5|C|196
9TV2|1|L5|A|197
9TV2|1|L5|A|198
9TV2|1|L5|G|199
*
9TV2|1|L5|C|215
9TV2|1|L5|C|216
9TV2|1|L5|C|217
9TV2|1|L5|A|218
9TV2|1|L5|G|219
9TV2|1|L5|C|220
9TV2|1|L5|C|221
9TV2|1|L5|C|222
9TV2|1|L5|G|223
9TV2|1|L5|U|224
9TV2|1|L5|G|225
9TV2|1|L5|G|226
9TV2|1|L5|A|227
9TV2|1|L5|C|228
*
9TV2|1|L5|G|240
9TV2|1|L5|G|241
9TV2|1|L5|U|242
9TV2|1|L5|A|243
9TV2|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26