J3_9TV2_008

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

9TV2|1|L5|A|1801, 9TV2|1|L5|U|1830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TV2|1|L5|U|1722
9TV2|1|L5|U|1723
*
9TV2|1|L5|A|1798
9TV2|1|L5|G|1799
9TV2|1|L5|A|1800
9TV2|1|L5|A|1801
9TV2|1|L5|G|1802
*
9TV2|1|L5|C|1828
9TV2|1|L5|G|1829
9TV2|1|L5|U|1830
9TV2|1|L5|G|1831
9TV2|1|L5|G|1832
9TV2|1|L5|A|1833

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29