J3_9TV2_015
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- (OMG)UC*GCCUCACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 9TV2|1|L5|C|4323, 9TV2|1|L5|U|4360
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TV2|1|L5|OMG|4214
9TV2|1|L5|U|4215
9TV2|1|L5|C|4216
*
9TV2|1|L5|G|4317
9TV2|1|L5|C|4318
9TV2|1|L5|C|4319
9TV2|1|L5|U|4320
9TV2|1|L5|C|4321
9TV2|1|L5|A|4322
9TV2|1|L5|C|4323
9TV2|1|L5|G|4324
9TV2|1|L5|A|4325
9TV2|1|L5|U|4326
9TV2|1|L5|C|4327
9TV2|1|L5|C|4328
*
9TV2|1|L5|OMG|4356
9TV2|1|L5|G|4357
9TV2|1|L5|U|4358
9TV2|1|L5|G|4359
9TV2|1|L5|U|4360
9TV2|1|L5|C|4361
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lo
- 60S ribosomal protein L36a
- Chain S6
- E-site tRNA
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