J3_9TV2_017

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9TV2|1|L5|A|4450, 9TV2|1|L5|U|4451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TV2|1|L5|U|4449
9TV2|1|L5|A|4450
9TV2|1|L5|U|4451
9TV2|1|L5|C|4452
*
9TV2|1|L5|G|4477
9TV2|1|L5|U|4478
9TV2|1|L5|U|4479
*
9TV2|1|L5|A|4493
9TV2|1|L5|C|4494
9TV2|1|L5|U|4495
9TV2|1|L5|A|4496
9TV2|1|L5|A|4497
9TV2|1|L5|U|4498
9TV2|1|L5|A|4499

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23