J3_9TV2_024
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- U(OMG)GA*U(PSU)AAGAG*CAUUA
- Length
- 16 nucleotides
- Bulged bases
- 9TV2|1|S2|G|921
- QA status
- Modified nucleotides: OMG, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TV2|1|S2|U|682
9TV2|1|S2|OMG|683
9TV2|1|S2|G|684
9TV2|1|S2|A|685
*
9TV2|1|S2|U|917
9TV2|1|S2|PSU|918
9TV2|1|S2|A|919
9TV2|1|S2|A|920
9TV2|1|S2|G|921
9TV2|1|S2|A|922
9TV2|1|S2|G|923
*
9TV2|1|S2|C|1019
9TV2|1|S2|A|1020
9TV2|1|S2|U|1021
9TV2|1|S2|U|1022
9TV2|1|S2|A|1023
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SH
- 40S ribosomal protein S7
- Chain SL
- Small ribosomal subunit protein uS17
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
- Chain Sb
- 40S ribosomal protein S27
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