J3_9TZ9_002
3D structure
- PDB id
- 9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Empty 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 9TZ9|1|a|U|509, 9TZ9|1|a|A|513
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9TZ9_002 not in the Motif Atlas
- Homologous match to J3_7A0S_015
- Geometric discrepancy: 0.2506
- The information below is about J3_7A0S_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.2
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9TZ9|1|a|G|38
9TZ9|1|a|C|39
*
9TZ9|1|a|G|479
9TZ9|1|a|U|480
9TZ9|1|a|G|481
9TZ9|1|a|A|482
9TZ9|1|a|A|483
9TZ9|1|a|A|484
9TZ9|1|a|A|485
9TZ9|1|a|G|486
9TZ9|1|a|A|487
9TZ9|1|a|A|488
9TZ9|1|a|C|489
*
9TZ9|1|a|G|501
9TZ9|1|a|A|502
9TZ9|1|a|G|503
9TZ9|1|a|U|504
9TZ9|1|a|G|505
9TZ9|1|a|A|506
9TZ9|1|a|A|507
9TZ9|1|a|A|508
9TZ9|1|a|U|509
9TZ9|1|a|A|510
9TZ9|1|a|G|511
9TZ9|1|a|A|512
9TZ9|1|a|A|513
9TZ9|1|a|C|514
9TZ9|1|a|C|515
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein uL24
- Chain e
- Large ribosomal subunit protein bL20
- Chain j
- Large ribosomal subunit protein uL22
Coloring options: