J3_9TZ9_005

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CAGAAU*AGCCAUAGCG*CGUACG

Length

22 nucleotides

Bulged bases

9TZ9|1|a|U|325, 9TZ9|1|a|C|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TZ9|1|a|C|300
9TZ9|1|a|A|301
9TZ9|1|a|G|302
9TZ9|1|a|A|303
9TZ9|1|a|A|304
9TZ9|1|a|U|305
*
9TZ9|1|a|A|320
9TZ9|1|a|G|321
9TZ9|1|a|C|322
9TZ9|1|a|C|323
9TZ9|1|a|A|324
9TZ9|1|a|U|325
9TZ9|1|a|A|326
9TZ9|1|a|G|327
9TZ9|1|a|C|328
9TZ9|1|a|G|329
*
9TZ9|1|a|C|341
9TZ9|1|a|G|342
9TZ9|1|a|U|343
9TZ9|1|a|A|344
9TZ9|1|a|C|345
9TZ9|1|a|G|346

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL24

Chain w

Large ribosomal subunit protein uL4