J3_9TZE_020
3D structure
- PDB id
- 9TZE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Coxiella burnetii Ribosome with Doxycycline and HPFcold
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CUUG*CGAUAGCGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9TZE|1|a|U|42, 9TZE|1|a|U|453, 9TZE|1|a|C|461
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9TZE_020 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.3782
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
9TZE|1|a|C|40
9TZE|1|a|U|41
9TZE|1|a|U|42
9TZE|1|a|G|43
*
9TZE|1|a|C|450
9TZE|1|a|G|451
9TZE|1|a|A|452
9TZE|1|a|U|453
9TZE|1|a|A|454
9TZE|1|a|G|455
9TZE|1|a|C|456
9TZE|1|a|G|457
9TZE|1|a|A|458
9TZE|1|a|A|459
9TZE|1|a|C|460
9TZE|1|a|C|461
9TZE|1|a|A|462
9TZE|1|a|G|463
9TZE|1|a|U|464
9TZE|1|a|A|465
9TZE|1|a|C|466
*
9TZE|1|a|G|473
9TZE|1|a|G|474
9TZE|1|a|A|475
9TZE|1|a|A|476
9TZE|1|a|A|477
9TZE|1|a|G|478
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 7
- Large ribosomal subunit protein uL23
- Chain e
- Large ribosomal subunit protein bL20
- Chain w
- Large ribosomal subunit protein uL4
- Chain y
- Large ribosomal subunit protein bL34
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