J3_9UWH_013

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGA*UAC*GGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9UWH_013 not in the Motif Atlas

Homologous match to J3_6CZR_019

Geometric discrepancy: 0.1858

The information below is about J3_6CZR_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UWH|1|AA|A|1198
9UWH|1|AA|G|1199
9UWH|1|AA|G|1200
9UWH|1|AA|A|1201
*
9UWH|1|AA|U|1364
9UWH|1|AA|A|1365
9UWH|1|AA|C|1366
*
9UWH|1|AA|G|1421
9UWH|1|AA|G|1422
9UWH|1|AA|A|1423
9UWH|1|AA|U|1424

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AF

Small ribosomal subunit protein uS7m

Chain AG

Small ribosomal subunit protein uS9m

Chain Ax

P/P-tRNA