J3_9VVI_020
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9VVI|1|a|U|34, 9VVI|1|a|U|448, 9VVI|1|a|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VVI_020 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.3766
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.3
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
9VVI|1|a|C|32
9VVI|1|a|C|33
9VVI|1|a|U|34
9VVI|1|a|G|35
*
9VVI|1|a|C|445
9VVI|1|a|G|446
9VVI|1|a|A|447
9VVI|1|a|U|448
9VVI|1|a|A|449
9VVI|1|a|G|450
9VVI|1|a|U|451
9VVI|1|a|G|452
9VVI|1|a|A|453
9VVI|1|a|A|454
9VVI|1|a|C|455
9VVI|1|a|C|456
9VVI|1|a|A|457
9VVI|1|a|G|458
9VVI|1|a|U|459
9VVI|1|a|A|460
9VVI|1|a|C|461
*
9VVI|1|a|G|468
9VVI|1|a|G|469
9VVI|1|a|A|470
9VVI|1|a|A|471
9VVI|1|a|A|472
9VVI|1|a|G|473
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain e
- 50S ribosomal protein L4
- Chain p
- Large ribosomal subunit protein bL20
- Chain s
- Large ribosomal subunit protein uL23
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