J3_9VXM_001

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAG*CAAUAGAUAUAGUAC*GGAAAG

Length

25 nucleotides

Bulged bases

9VXM|1|A|U|1774

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXM|1|A|C|1678
9VXM|1|A|U|1679
9VXM|1|A|A|1680
9VXM|1|A|G|1681
*
9VXM|1|A|C|1771
9VXM|1|A|A|1772
9VXM|1|A|A|1773
9VXM|1|A|U|1774
9VXM|1|A|A|1775
9VXM|1|A|G|1776
9VXM|1|A|A|1777
9VXM|1|A|U|1778
9VXM|1|A|A|1779
9VXM|1|A|U|1780
9VXM|1|A|A|1781
9VXM|1|A|G|1782
9VXM|1|A|U|1783
9VXM|1|A|A|1784
9VXM|1|A|C|1785
*
9VXM|1|A|G|1792
9VXM|1|A|G|1793
9VXM|1|A|A|1794
9VXM|1|A|A|1795
9VXM|1|A|A|1796
9VXM|1|A|G|1797

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34m

Chain 9

Large ribosomal subunit protein mL41

Chain F

Large ribosomal subunit protein uL4m

Chain R

Large ribosomal subunit protein bL20m

Chain U

Large ribosomal subunit protein uL23m

Chain V

Large ribosomal subunit protein uL24m

Chain Y

Large ribosomal subunit protein uL29m

Chain c

Large ribosomal subunit protein mL44

Chain d

Large ribosomal subunit protein mL45

Chain i

Large ribosomal subunit protein mL51