J3_9VXM_002
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAAACCCACUCCACCUUACUACCAGACAACCUUAGCCA*UUACCCAAAUA*UUGAAACCUG
- Length
- 60 nucleotides
- Bulged bases
- 9VXM|1|A|C|1699, 9VXM|1|A|U|1701, 9VXM|1|A|C|1707, 9VXM|1|A|A|1708, 9VXM|1|A|C|1715, 9VXM|1|A|U|1716, 9VXM|1|A|A|1735, 9VXM|1|A|C|1764
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VXM|1|A|C|1684
9VXM|1|A|C|1685
9VXM|1|A|A|1686
9VXM|1|A|A|1687
9VXM|1|A|A|1688
9VXM|1|A|C|1689
9VXM|1|A|C|1690
9VXM|1|A|C|1691
9VXM|1|A|A|1692
9VXM|1|A|C|1693
9VXM|1|A|U|1694
9VXM|1|A|C|1695
9VXM|1|A|C|1696
9VXM|1|A|A|1697
9VXM|1|A|C|1698
9VXM|1|A|C|1699
9VXM|1|A|U|1700
9VXM|1|A|U|1701
9VXM|1|A|A|1702
9VXM|1|A|C|1703
9VXM|1|A|U|1704
9VXM|1|A|A|1705
9VXM|1|A|C|1706
9VXM|1|A|C|1707
9VXM|1|A|A|1708
9VXM|1|A|G|1709
9VXM|1|A|A|1710
9VXM|1|A|C|1711
9VXM|1|A|A|1712
9VXM|1|A|A|1713
9VXM|1|A|C|1714
9VXM|1|A|C|1715
9VXM|1|A|U|1716
9VXM|1|A|U|1717
9VXM|1|A|A|1718
9VXM|1|A|G|1719
9VXM|1|A|C|1720
9VXM|1|A|C|1721
9VXM|1|A|A|1722
*
9VXM|1|A|U|1729
9VXM|1|A|U|1730
9VXM|1|A|A|1731
9VXM|1|A|C|1732
9VXM|1|A|C|1733
9VXM|1|A|C|1734
9VXM|1|A|A|1735
9VXM|1|A|A|1736
9VXM|1|A|A|1737
9VXM|1|A|U|1738
9VXM|1|A|A|1739
*
9VXM|1|A|U|1758
9VXM|1|A|U|1759
9VXM|1|A|G|1760
9VXM|1|A|A|1761
9VXM|1|A|A|1762
9VXM|1|A|A|1763
9VXM|1|A|C|1764
9VXM|1|A|C|1765
9VXM|1|A|U|1766
9VXM|1|A|G|1767
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34m
- Chain 3
- Large ribosomal subunit protein bL35m
- Chain 5
- Large ribosomal subunit protein mL37
- Chain 9
- Large ribosomal subunit protein mL41
- Chain F
- Large ribosomal subunit protein uL4m
- Chain H
- Large ribosomal subunit protein bL9m
- Chain M
- Large ribosomal subunit protein uL15m
- Chain U
- Large ribosomal subunit protein uL23m
- Chain V
- Large ribosomal subunit protein uL24m
- Chain X
- Large ribosomal subunit protein bL28m
- Chain Y
- Large ribosomal subunit protein uL29m
- Chain i
- Large ribosomal subunit protein mL51
- Chain q
- Large ribosomal subunit protein mL64
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