J3_9VXM_003
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAGCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 9VXM|1|A|G|1918, 9VXM|1|A|G|2002, 9VXM|1|A|A|2003
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VXM_003 not in the Motif Atlas
- Homologous match to J3_7A0S_004
- Geometric discrepancy: 0.2629
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.3
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9VXM|1|A|C|1915
9VXM|1|A|G|1916
9VXM|1|A|A|1917
9VXM|1|A|G|1918
9VXM|1|A|C|1919
9VXM|1|A|U|1920
9VXM|1|A|A|1921
*
9VXM|1|A|U|1983
9VXM|1|A|A|1984
9VXM|1|A|G|1985
*
9VXM|1|A|C|2001
9VXM|1|A|G|2002
9VXM|1|A|A|2003
9VXM|1|A|G|2004
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34m
- Chain 9
- Large ribosomal subunit protein mL41
- Chain D
- Large ribosomal subunit protein uL2m
- Chain d
- Large ribosomal subunit protein mL45
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