J3_9VXM_005
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAAAUUUAACACCCAU*AUUAAG*CAACACCCACUACCUAAAAAAUCCCAAACAUAUAACU
- Length
- 59 nucleotides
- Bulged bases
- 9VXM|1|A|A|2154, 9VXM|1|A|C|2219, 9VXM|1|A|C|2221, 9VXM|1|A|C|2224, 9VXM|1|A|C|2225, 9VXM|1|A|U|2226, 9VXM|1|A|U|2233, 9VXM|1|A|A|2241, 9VXM|1|A|U|2242, 9VXM|1|A|A|2243, 9VXM|1|A|U|2244
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VXM|1|A|A|2153
9VXM|1|A|A|2154
9VXM|1|A|A|2155
9VXM|1|A|A|2156
9VXM|1|A|U|2157
9VXM|1|A|U|2158
9VXM|1|A|U|2159
9VXM|1|A|A|2160
9VXM|1|A|A|2161
9VXM|1|A|C|2162
9VXM|1|A|A|2163
9VXM|1|A|C|2164
9VXM|1|A|C|2165
9VXM|1|A|C|2166
9VXM|1|A|A|2167
9VXM|1|A|U|2168
*
9VXM|1|A|A|2192
9VXM|1|A|U|2193
9VXM|1|A|U|2194
9VXM|1|A|A|2195
9VXM|1|A|A|2196
9VXM|1|A|G|2197
*
9VXM|1|A|C|2212
9VXM|1|A|A|2213
9VXM|1|A|A|2214
9VXM|1|A|C|2215
9VXM|1|A|A|2216
9VXM|1|A|C|2217
9VXM|1|A|C|2218
9VXM|1|A|C|2219
9VXM|1|A|A|2220
9VXM|1|A|C|2221
9VXM|1|A|U|2222
9VXM|1|A|A|2223
9VXM|1|A|C|2224
9VXM|1|A|C|2225
9VXM|1|A|U|2226
9VXM|1|A|A|2227
9VXM|1|A|A|2228
9VXM|1|A|A|2229
9VXM|1|A|A|2230
9VXM|1|A|A|2231
9VXM|1|A|A|2232
9VXM|1|A|U|2233
9VXM|1|A|C|2234
9VXM|1|A|C|2235
9VXM|1|A|C|2236
9VXM|1|A|A|2237
9VXM|1|A|A|2238
9VXM|1|A|A|2239
9VXM|1|A|C|2240
9VXM|1|A|A|2241
9VXM|1|A|U|2242
9VXM|1|A|A|2243
9VXM|1|A|U|2244
9VXM|1|A|A|2245
9VXM|1|A|A|2246
9VXM|1|A|C|2247
9VXM|1|A|U|2248
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL36m
- Chain E
- Large ribosomal subunit protein uL3m
- Chain I
- Large ribosomal subunit protein uL10m
- Chain J
- Large ribosomal subunit protein uL11m
- Chain N
- Large ribosomal subunit protein uL16m
- Chain R
- Large ribosomal subunit protein bL20m
- Chain S
- Large ribosomal subunit protein bL21m
- Chain j
- Large ribosomal subunit protein mL52
- Chain k
- Large ribosomal subunit protein uL13m
- Chain l
- Large ribosomal subunit protein mL54
- Chain n
- Large ribosomal subunit protein mL53
- Chain o
- Large ribosomal subunit protein mL63
- Chain r
- Large ribosomal subunit protein mL66
Coloring options: