J3_9VXM_014
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGGA*UAC*GGAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9VXM_014 not in the Motif Atlas
- Homologous match to J3_6CZR_019
- Geometric discrepancy: 0.165
- The information below is about J3_6CZR_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VXM|1|AA|A|1198
9VXM|1|AA|G|1199
9VXM|1|AA|G|1200
9VXM|1|AA|A|1201
*
9VXM|1|AA|U|1364
9VXM|1|AA|A|1365
9VXM|1|AA|C|1366
*
9VXM|1|AA|G|1421
9VXM|1|AA|G|1422
9VXM|1|AA|A|1423
9VXM|1|AA|U|1424
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain AF
- Small ribosomal subunit protein uS7m
- Chain AG
- Small ribosomal subunit protein uS9m
- Chain Ax
- Transfer RNA; tRNA
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