J3_9VXM_015

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAAUC*GAUCAACCUCAC*GCAA

Length

23 nucleotides

Bulged bases

9VXM|1|AA|U|1229, 9VXM|1|AA|C|1230, 9VXM|1|AA|A|1231, 9VXM|1|AA|A|1232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VXM|1|AA|U|1210
9VXM|1|AA|G|1211
9VXM|1|AA|U|1212
9VXM|1|AA|A|1213
9VXM|1|AA|A|1214
9VXM|1|AA|U|1215
9VXM|1|AA|C|1216
*
9VXM|1|AA|G|1227
9VXM|1|AA|A|1228
9VXM|1|AA|U|1229
9VXM|1|AA|C|1230
9VXM|1|AA|A|1231
9VXM|1|AA|A|1232
9VXM|1|AA|C|1233
9VXM|1|AA|C|1234
9VXM|1|AA|U|1235
9VXM|1|AA|C|1236
9VXM|1|AA|A|1237
9VXM|1|AA|C|1238
*
9VXM|1|AA|G|1351
9VXM|1|AA|C|1352
9VXM|1|AA|A|1353
9VXM|1|AA|A|1354

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain 8

Large ribosomal subunit protein mL40

Chain AH

Small ribosomal subunit protein uS10m

Chain AK

Small ribosomal subunit protein uS14m

Chain Aw

A/A-tRNA