J3_9VXN_008
3D structure
- PDB id
- 9VXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.51 Å
Loop
- Sequence
- UGA(A2M)C(PSU)A*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 9VXN|1|L5|A2M|1534, 9VXN|1|L5|G|1641, 9VXN|1|L5|A|1642
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VXN|1|L5|U|1531
9VXN|1|L5|G|1532
9VXN|1|L5|A|1533
9VXN|1|L5|A2M|1534
9VXN|1|L5|C|1535
9VXN|1|L5|PSU|1536
9VXN|1|L5|A|1537
*
9VXN|1|L5|U|1622
9VXN|1|L5|A|1623
9VXN|1|L5|G|1624
*
9VXN|1|L5|C|1640
9VXN|1|L5|G|1641
9VXN|1|L5|A|1642
9VXN|1|L5|A|1643
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2
- Chain LN
- Large ribosomal subunit protein eL15
- Chain Lj
- Large ribosomal subunit protein eL37
- Chain Ll
- Large ribosomal subunit protein eL39
Coloring options: