J3_9WNR_008
3D structure
- PDB id
- 9WNR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WNR_008 not in the Motif Atlas
- Homologous match to J3_6CZR_019
- Geometric discrepancy: 0.2426
- The information below is about J3_6CZR_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9WNR|1|A|U|943
9WNR|1|A|G|944
9WNR|1|A|G|945
9WNR|1|A|A|946
*
9WNR|1|A|U|1235
9WNR|1|A|A|1236
9WNR|1|A|C|1237
*
9WNR|1|A|G|1337
9WNR|1|A|G|1338
9WNR|1|A|A|1339
9WNR|1|A|A|1340
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S9
- Chain M
- 30S ribosomal protein S13
- Chain X
- Transfer RNA; tRNA
- Chain Y
- Transfer RNA; tRNA
Coloring options: