J3_9WNR_021
3D structure
- PDB id
- 9WNR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 9WNR|1|b|U|72, 9WNR|1|b|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WNR_021 not in the Motif Atlas
- Homologous match to J3_7A0S_002
- Geometric discrepancy: 0.1907
- The information below is about J3_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9WNR|1|b|A|56
9WNR|1|b|C|57
*
9WNR|1|b|G|70
9WNR|1|b|A|71
9WNR|1|b|U|72
9WNR|1|b|A|73
9WNR|1|b|A|74
9WNR|1|b|G|75
9WNR|1|b|C|76
*
9WNR|1|b|G|110
9WNR|1|b|A|111
9WNR|1|b|U|112
9WNR|1|b|U|113
9WNR|1|b|U|114
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein uL29
- Chain 6
- 50S ribosomal protein L34
- Chain u
- Large ribosomal subunit protein uL23
Coloring options: