J3_9WNR_025

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CAGGAUGUUGG*CAUCAUUUAAAGAAAG*CUCACUG

Length

34 nucleotides

Bulged bases

9WNR|1|b|U|1061, 9WNR|1|b|U|1078, 9WNR|1|b|U|1081, 9WNR|1|b|G|1087, 9WNR|1|b|A|1089, 9WNR|1|b|A|1090, 9WNR|1|b|A|1103

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WNR|1|b|C|1053
9WNR|1|b|A|1054
9WNR|1|b|G|1055
9WNR|1|b|G|1056
9WNR|1|b|A|1057
9WNR|1|b|U|1058
9WNR|1|b|G|1059
9WNR|1|b|U|1060
9WNR|1|b|U|1061
9WNR|1|b|G|1062
9WNR|1|b|G|1063
*
9WNR|1|b|C|1076
9WNR|1|b|A|1077
9WNR|1|b|U|1078
9WNR|1|b|C|1079
9WNR|1|b|A|1080
9WNR|1|b|U|1081
9WNR|1|b|U|1082
9WNR|1|b|U|1083
9WNR|1|b|A|1084
9WNR|1|b|A|1085
9WNR|1|b|A|1086
9WNR|1|b|G|1087
9WNR|1|b|A|1088
9WNR|1|b|A|1089
9WNR|1|b|A|1090
9WNR|1|b|G|1091
*
9WNR|1|b|C|1100
9WNR|1|b|U|1101
9WNR|1|b|C|1102
9WNR|1|b|A|1103
9WNR|1|b|C|1104
9WNR|1|b|U|1105
9WNR|1|b|G|1106

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36