J3_9WW4_005
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 9WW4|1|AA|G|409, 9WW4|1|AA|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WW4_005 not in the Motif Atlas
- Homologous match to J3_8GLP_026
- Geometric discrepancy: 0.0662
- The information below is about J3_8GLP_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.4
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
9WW4|1|AA|U|380
9WW4|1|AA|U|381
9WW4|1|AA|G|382
9WW4|1|AA|A|383
9WW4|1|AA|A|384
9WW4|1|AA|A|385
9WW4|1|AA|A|386
9WW4|1|AA|G|387
9WW4|1|AA|A|388
9WW4|1|AA|A|389
9WW4|1|AA|C|390
*
9WW4|1|AA|G|401
9WW4|1|AA|A|402
9WW4|1|AA|G|403
9WW4|1|AA|U|404
9WW4|1|AA|U|405
9WW4|1|AA|C|406
9WW4|1|AA|A|407
9WW4|1|AA|A|408
9WW4|1|AA|G|409
9WW4|1|AA|A|410
9WW4|1|AA|G|411
9WW4|1|AA|G|412
9WW4|1|AA|G|413
9WW4|1|AA|C|414
9WW4|1|AA|G|415
*
9WW4|1|AC|C|19
9WW4|1|AC|A|20
Current chains
- Chain AA
- 28S rRNA (3773-MER)
- Chain AC
- 5.8S rRNA (156-MER)
Nearby chains
- Chain AF
- Large ribosomal subunit protein uL4
- Chain AR
- 60S ribosomal protein L17
- Chain Aa
- 60S ribosomal protein L26
- Chain An
- 60S ribosomal protein L39
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