J3_9WW4_006
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CAGUC*GUGCG*CGACG
- Length
- 15 nucleotides
- Bulged bases
- 9WW4|1|AA|C|704, 9WW4|1|AA|A|1294, 9WW4|1|AA|C|1295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WW4_006 not in the Motif Atlas
- Homologous match to J3_8GLP_027
- Geometric discrepancy: 0.5169
- The information below is about J3_8GLP_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9WW4|1|AA|C|451
9WW4|1|AA|A|452
9WW4|1|AA|G|453
9WW4|1|AA|U|454
9WW4|1|AA|C|455
*
9WW4|1|AA|G|701
9WW4|1|AA|U|702
9WW4|1|AA|G|703
9WW4|1|AA|C|704
9WW4|1|AA|G|705
*
9WW4|1|AA|C|1292
9WW4|1|AA|G|1293
9WW4|1|AA|A|1294
9WW4|1|AA|C|1295
9WW4|1|AA|G|1296
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AH
- Large ribosomal subunit protein eL6
- Chain Ag
- 60S ribosomal protein L32
- Chain Ah
- 60S ribosomal protein L35a
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