J3_9WW4_007

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9WW4|1|AA|G|959, 9WW4|1|AA|C|962, 9WW4|1|AA|C|967, 9WW4|1|AA|C|968, 9WW4|1|AA|C|969, 9WW4|1|AA|U|971, 9WW4|1|AA|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW4|1|AA|C|712
9WW4|1|AA|C|713
*
9WW4|1|AA|G|955
9WW4|1|AA|A|956
9WW4|1|AA|G|957
9WW4|1|AA|G|958
9WW4|1|AA|G|959
9WW4|1|AA|A|960
9WW4|1|AA|G|961
9WW4|1|AA|C|962
9WW4|1|AA|G|963
9WW4|1|AA|A|964
9WW4|1|AA|G|965
9WW4|1|AA|A|966
9WW4|1|AA|C|967
9WW4|1|AA|C|968
9WW4|1|AA|C|969
9WW4|1|AA|G|970
9WW4|1|AA|U|971
9WW4|1|AA|C|972
9WW4|1|AA|G|973
9WW4|1|AA|C|974
9WW4|1|AA|C|975
9WW4|1|AA|G|976
*
9WW4|1|AA|C|1278
9WW4|1|AA|A|1279
9WW4|1|AA|C|1280
9WW4|1|AA|G|1281
9WW4|1|AA|G|1282
9WW4|1|AA|G|1283
9WW4|1|AA|G|1284

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain AH

Large ribosomal subunit protein eL6

Chain AI

60S ribosomal protein L7

Chain Ag

60S ribosomal protein L32