J3_9WW4_010

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

9WW4|1|AA|A|1805, 9WW4|1|AA|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW4_010 not in the Motif Atlas

Homologous match to J3_8GLP_029

Geometric discrepancy: 0.1353

The information below is about J3_8GLP_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.2

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

5

Unit IDs

9WW4|1|AA|U|1726
9WW4|1|AA|U|1727
*
9WW4|1|AA|A|1802
9WW4|1|AA|G|1803
9WW4|1|AA|A|1804
9WW4|1|AA|A|1805
9WW4|1|AA|G|1806
*
9WW4|1|AA|C|1832
9WW4|1|AA|G|1833
9WW4|1|AA|U|1834
9WW4|1|AA|G|1835
9WW4|1|AA|G|1836
9WW4|1|AA|A|1837

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AI

60S ribosomal protein L7

Chain AV

60S ribosomal protein L21

Chain Ad

60S ribosomal protein L29