J3_9WW4_020
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 9WW4|1|AA|A|4280, 9WW4|1|AA|A|4282
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WW4_020 not in the Motif Atlas
- Homologous match to J3_8GLP_009
- Geometric discrepancy: 0.058
- The information below is about J3_8GLP_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.4
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 12
Unit IDs
9WW4|1|AA|C|4241
9WW4|1|AA|U|4242
9WW4|1|AA|C|4243
*
9WW4|1|AA|G|4267
9WW4|1|AA|A|4268
9WW4|1|AA|G|4269
*
9WW4|1|AA|C|4278
9WW4|1|AA|A|4279
9WW4|1|AA|A|4280
9WW4|1|AA|A|4281
9WW4|1|AA|A|4282
9WW4|1|AA|G|4283
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AG
- Large ribosomal subunit protein uL18
- Chain AM
- 60S ribosomal protein L11
- Chain AV
- 60S ribosomal protein L21
Coloring options: