J3_9WW4_025

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

AC*GAGAAUU*ACACU

Length

14 nucleotides

Bulged bases

9WW4|1|AC|A|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9WW4_025 not in the Motif Atlas

Homologous match to J3_8GLP_039

Geometric discrepancy: 0.0487

The information below is about J3_8GLP_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01004.4

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

12

Unit IDs

9WW4|1|AC|A|44
9WW4|1|AC|C|45
*
9WW4|1|AC|G|58
9WW4|1|AC|A|59
9WW4|1|AC|G|60
9WW4|1|AC|A|61
9WW4|1|AC|A|62
9WW4|1|AC|U|63
9WW4|1|AC|U|64
*
9WW4|1|AC|A|95
9WW4|1|AC|C|96
9WW4|1|AC|A|97
9WW4|1|AC|C|98
9WW4|1|AC|U|99

Current chains

Chain AC

5.8S rRNA (156-MER)

Nearby chains

Chain AZ

60S ribosomal protein L23a

Chain Aj

60S ribosomal protein L35

Chain Al

60S ribosomal protein L37

Chain An

60S ribosomal protein L39