J3_9WW4_030
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9WW4_030 not in the Motif Atlas
- Homologous match to J3_9SUM_029
- Geometric discrepancy: 0.1435
- The information below is about J3_9SUM_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97642.5
- Basepair signature
- cWW-tSH-F-F-cWW-F-tWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9WW4|1|BA|A|816
9WW4|1|BA|G|817
9WW4|1|BA|A|818
9WW4|1|BA|G|819
*
9WW4|1|BA|C|829
9WW4|1|BA|A|830
9WW4|1|BA|G|831
*
9WW4|1|BA|C|843
9WW4|1|BA|U|844
9WW4|1|BA|G|845
9WW4|1|BA|G|846
9WW4|1|BA|A|847
9WW4|1|BA|U|848
Current chains
- Chain BA
- 18S rRNA (1740-MER)
Nearby chains
- Chain BB
- 40S ribosomal protein S4, X isoform
- Chain BX
- 40S ribosomal protein S9
- Chain Bc
- 40S ribosomal protein S24
Coloring options: