J3_9WW4_036
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- GC(OMC)CGGAC*GGGUG*UUAGAUGUC
- Length
- 22 nucleotides
- Bulged bases
- 9WW4|1|BA|G|1274, 9WW4|1|BA|G|1507, 9WW4|1|BA|U|1509
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9WW4|1|BA|G|1270
9WW4|1|BA|C|1271
9WW4|1|BA|OMC|1272
9WW4|1|BA|C|1273
9WW4|1|BA|G|1274
9WW4|1|BA|G|1275
9WW4|1|BA|A|1276
9WW4|1|BA|C|1277
*
9WW4|1|BA|G|1320
9WW4|1|BA|G|1321
9WW4|1|BA|G|1322
9WW4|1|BA|U|1323
9WW4|1|BA|G|1324
*
9WW4|1|BA|U|1504
9WW4|1|BA|U|1505
9WW4|1|BA|A|1506
9WW4|1|BA|G|1507
9WW4|1|BA|A|1508
9WW4|1|BA|U|1509
9WW4|1|BA|G|1510
9WW4|1|BA|U|1511
9WW4|1|BA|C|1512
Current chains
- Chain BA
- 18S rRNA (1740-MER)
Nearby chains
- Chain BI
- 40S ribosomal protein S10
- Chain BK
- 40S ribosomal protein S15
- Chain BT
- 40S ribosomal protein S29
- Chain Bg
- Ubiquitin-40S ribosomal protein S27a
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