J3_9WW6_007

3D structure

PDB id

9WW6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome delta eL41 non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9WW6|1|AA|G|959, 9WW6|1|AA|C|962, 9WW6|1|AA|G|965, 9WW6|1|AA|C|967, 9WW6|1|AA|C|968, 9WW6|1|AA|C|969, 9WW6|1|AA|U|971, 9WW6|1|AA|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW6|1|AA|C|712
9WW6|1|AA|C|713
*
9WW6|1|AA|G|955
9WW6|1|AA|A|956
9WW6|1|AA|G|957
9WW6|1|AA|G|958
9WW6|1|AA|G|959
9WW6|1|AA|A|960
9WW6|1|AA|G|961
9WW6|1|AA|C|962
9WW6|1|AA|G|963
9WW6|1|AA|A|964
9WW6|1|AA|G|965
9WW6|1|AA|A|966
9WW6|1|AA|C|967
9WW6|1|AA|C|968
9WW6|1|AA|C|969
9WW6|1|AA|G|970
9WW6|1|AA|U|971
9WW6|1|AA|C|972
9WW6|1|AA|G|973
9WW6|1|AA|C|974
9WW6|1|AA|C|975
9WW6|1|AA|G|976
*
9WW6|1|AA|C|1278
9WW6|1|AA|A|1279
9WW6|1|AA|C|1280
9WW6|1|AA|G|1281
9WW6|1|AA|G|1282
9WW6|1|AA|G|1283
9WW6|1|AA|G|1284

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AF

Large ribosomal subunit protein uL4

Chain AH

Large ribosomal subunit protein eL6

Chain AI

60S ribosomal protein L7

Chain Ag

60S ribosomal protein L32