J3_9WW6_014
3D structure
- PDB id
- 9WW6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome delta eL41 non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 9WW6|1|AA|A|2472, 9WW6|1|AA|G|2503, 9WW6|1|AA|C|2504, 9WW6|1|AA|C|2505
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9WW6|1|AA|A|2451
9WW6|1|AA|G|2452
9WW6|1|AA|A|2453
9WW6|1|AA|U|2454
9WW6|1|AA|G|2455
9WW6|1|AA|G|2456
*
9WW6|1|AA|C|2465
9WW6|1|AA|G|2466
9WW6|1|AA|U|2467
9WW6|1|AA|U|2468
9WW6|1|AA|C|2469
9WW6|1|AA|C|2470
9WW6|1|AA|G|2471
9WW6|1|AA|A|2472
9WW6|1|AA|A|2473
9WW6|1|AA|G|2474
9WW6|1|AA|G|2475
9WW6|1|AA|G|2476
*
9WW6|1|AA|C|2501
9WW6|1|AA|G|2502
9WW6|1|AA|G|2503
9WW6|1|AA|C|2504
9WW6|1|AA|C|2505
9WW6|1|AA|G|2506
9WW6|1|AA|A|2507
9WW6|1|AA|PSU|2508
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AD
- 60S ribosomal protein L8
- Chain AJ
- 60S ribosomal protein L7a
- Chain AP
- 60S ribosomal protein L15
- Chain AZ
- 60S ribosomal protein L23a
- Chain Al
- 60S ribosomal protein L37
Coloring options: