J3_9WW6_030

3D structure

PDB id

9WW6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome delta eL41 non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW6|1|BA|C|1218
9WW6|1|BA|C|1219
9WW6|1|BA|A|1220
9WW6|1|BA|G|1221
*
9WW6|1|BA|C|1645
9WW6|1|BA|C|1646
9WW6|1|BA|A|1647
9WW6|1|BA|G|1648
9WW6|1|BA|U|1649
9WW6|1|BA|A|1650
9WW6|1|BA|A|1651
*
9WW6|1|BA|U|1673
9WW6|1|BA|G|1674
9WW6|1|BA|A|1675
9WW6|1|BA|U|1676
9WW6|1|BA|U|1677
9WW6|1|BA|A2M|1678
9WW6|1|BA|A|1679
9WW6|1|BA|G|1680

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BF

40S ribosomal protein S5

Chain BL

40S ribosomal protein S16

Chain BS

40S ribosomal protein S28