J3_9WW6_032

3D structure

PDB id

9WW6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome delta eL41 non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

9WW6|1|BA|G|1256, 9WW6|1|BA|A|1258, 9WW6|1|BA|A|1260, 9WW6|1|BA|U|1519

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW6|1|BA|C|1237
9WW6|1|BA|PSU|1238
9WW6|1|BA|U|1239
9WW6|1|BA|A|1240
9WW6|1|BA|A|1241
9WW6|1|BA|U|1242
9WW6|1|BA|U|1243
9WW6|1|BA|PSU|1244
*
9WW6|1|BA|G|1255
9WW6|1|BA|G|1256
9WW6|1|BA|G|1257
9WW6|1|BA|A|1258
9WW6|1|BA|A|1259
9WW6|1|BA|A|1260
9WW6|1|BA|C|1261
9WW6|1|BA|C|1262
9WW6|1|BA|U|1263
9WW6|1|BA|C|1264
9WW6|1|BA|A|1265
9WW6|1|BA|C|1266
*
9WW6|1|BA|G|1516
9WW6|1|BA|G|1517
9WW6|1|BA|C|1518
9WW6|1|BA|U|1519
9WW6|1|BA|G|1520

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BK

40S ribosomal protein S15

Chain BM

40S ribosomal protein S18

Chain BO

40S ribosomal protein S20

Chain BT

40S ribosomal protein S29