J3_9XFK_001

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9XFK_001 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.0861

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

9XFK|1|I|G|30
9XFK|1|I|C|31
*
9XFK|1|I|G|474
9XFK|1|I|C|475
9XFK|1|I|G|476
9XFK|1|I|A|477
9XFK|1|I|A|478
9XFK|1|I|A|479
9XFK|1|I|A|480
9XFK|1|I|G|481
*
9XFK|1|I|C|509
9XFK|1|I|C|510

Current chains

Chain I

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L20

Chain c

Large ribosomal subunit protein uL24