J3_9XFK_006
3D structure
- PDB id
- 9XFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of bacterial 50S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 9XFK|1|I|U|686, 9XFK|1|I|A|792, 9XFK|1|I|A|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9XFK_006 not in the Motif Atlas
- Homologous match to J3_7A0S_004
- Geometric discrepancy: 0.1642
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9XFK|1|I|U|683
9XFK|1|I|G|684
9XFK|1|I|A|685
9XFK|1|I|U|686
9XFK|1|I|C|687
9XFK|1|I|U|688
9XFK|1|I|A|689
*
9XFK|1|I|U|773
9XFK|1|I|G|774
9XFK|1|I|G|775
*
9XFK|1|I|C|791
9XFK|1|I|A|792
9XFK|1|I|A|793
9XFK|1|I|A|794
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain K
- Large ribosomal subunit protein uL2
- Chain k
- 50S ribosomal protein L34
Coloring options: