J3_9XFK_008

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CCCAGACAGCCAGGA*UUUAAAGAAAG*CUCACUGGUCGAG

Length

39 nucleotides

Bulged bases

9XFK|1|I|A|1046, 9XFK|1|I|A|1088, 9XFK|1|I|A|1089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XFK|1|I|C|1043
9XFK|1|I|C|1044
9XFK|1|I|C|1045
9XFK|1|I|A|1046
9XFK|1|I|G|1047
9XFK|1|I|A|1048
9XFK|1|I|C|1049
9XFK|1|I|A|1050
9XFK|1|I|G|1051
9XFK|1|I|C|1052
9XFK|1|I|C|1053
9XFK|1|I|A|1054
9XFK|1|I|G|1055
9XFK|1|I|G|1056
9XFK|1|I|A|1057
*
9XFK|1|I|U|1081
9XFK|1|I|U|1082
9XFK|1|I|U|1083
9XFK|1|I|A|1084
9XFK|1|I|A|1085
9XFK|1|I|A|1086
9XFK|1|I|G|1087
9XFK|1|I|A|1088
9XFK|1|I|A|1089
9XFK|1|I|A|1090
9XFK|1|I|G|1091
*
9XFK|1|I|C|1100
9XFK|1|I|U|1101
9XFK|1|I|C|1102
9XFK|1|I|A|1103
9XFK|1|I|C|1104
9XFK|1|I|U|1105
9XFK|1|I|G|1106
9XFK|1|I|G|1107
9XFK|1|I|U|1108
9XFK|1|I|C|1109
9XFK|1|I|G|1110
9XFK|1|I|A|1111
9XFK|1|I|G|1112

Current chains

Chain I

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein uL6

Chain Q

50S ribosomal protein L11

Chain m

50S ribosomal protein L36