J3_9XFK_015

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

9XFK|1|I|U|2334, 9XFK|1|I|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XFK|1|I|C|2295
9XFK|1|I|U|2296
9XFK|1|I|A|2297
9XFK|1|I|A|2298
9XFK|1|I|U|2299
*
9XFK|1|I|A|2317
9XFK|1|I|G|2318
9XFK|1|I|G|2319
9XFK|1|I|U|2320
9XFK|1|I|U|2321
9XFK|1|I|A|2322
9XFK|1|I|G|2323
*
9XFK|1|I|C|2332
9XFK|1|I|A|2333
9XFK|1|I|U|2334
9XFK|1|I|A|2335
9XFK|1|I|A|2336
9XFK|1|I|G|2337

Current chains

Chain I

23S rRNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain N

50S ribosomal protein L5

Chain W

50S ribosomal protein L18

Chain e

50S ribosomal protein L27