J3_9XFK_019

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GCCGUAG*CGC*GGAAC

Length

15 nucleotides

Bulged bases

9XFK|1|J|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XFK|1|J|G|10
9XFK|1|J|C|11
9XFK|1|J|C|12
9XFK|1|J|G|13
9XFK|1|J|U|14
9XFK|1|J|A|15
9XFK|1|J|G|16
*
9XFK|1|J|C|68
9XFK|1|J|G|69
9XFK|1|J|C|70
*
9XFK|1|J|G|106
9XFK|1|J|G|107
9XFK|1|J|A|108
9XFK|1|J|A|109
9XFK|1|J|C|110

Current chains

Chain J

5S rRNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA

Chain W

50S ribosomal protein L18

Chain d

50S ribosomal protein L25

Chain e

50S ribosomal protein L27