J3_9XFL_003
3D structure
- PDB id
- 9XFL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In vitro structure of bacterial 50S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9XFL|1|I|U|34, 9XFL|1|I|U|448, 9XFL|1|I|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9XFL_003 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.3772
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
9XFL|1|I|C|32
9XFL|1|I|C|33
9XFL|1|I|U|34
9XFL|1|I|G|35
*
9XFL|1|I|C|445
9XFL|1|I|G|446
9XFL|1|I|A|447
9XFL|1|I|U|448
9XFL|1|I|A|449
9XFL|1|I|G|450
9XFL|1|I|U|451
9XFL|1|I|G|452
9XFL|1|I|A|453
9XFL|1|I|A|454
9XFL|1|I|C|455
9XFL|1|I|C|456
9XFL|1|I|A|457
9XFL|1|I|G|458
9XFL|1|I|U|459
9XFL|1|I|A|460
9XFL|1|I|C|461
*
9XFL|1|I|G|468
9XFL|1|I|G|469
9XFL|1|I|A|470
9XFL|1|I|A|471
9XFL|1|I|A|472
9XFL|1|I|G|473
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L4
- Chain Y
- 50S ribosomal protein L20
- Chain b
- 50S ribosomal protein L23
- Chain k
- 50S ribosomal protein L34
Coloring options: