J3_9XFL_015

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

9XFL|1|I|U|2334, 9XFL|1|I|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XFL|1|I|C|2295
9XFL|1|I|U|2296
9XFL|1|I|A|2297
9XFL|1|I|A|2298
9XFL|1|I|U|2299
*
9XFL|1|I|A|2317
9XFL|1|I|G|2318
9XFL|1|I|G|2319
9XFL|1|I|U|2320
9XFL|1|I|U|2321
9XFL|1|I|A|2322
9XFL|1|I|G|2323
*
9XFL|1|I|C|2332
9XFL|1|I|A|2333
9XFL|1|I|U|2334
9XFL|1|I|A|2335
9XFL|1|I|A|2336
9XFL|1|I|G|2337

Current chains

Chain I

23S rRNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain N

50S ribosomal protein L5

Chain W

50S ribosomal protein L18

Chain e

50S ribosomal protein L27