J3_9XWO_015

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UUAU*AGAC*GGUGG

Length

13 nucleotides

Bulged bases

9XWO|1|A|U|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XWO|1|A|U|1115
9XWO|1|A|U|1116
9XWO|1|A|A|1117
9XWO|1|A|U|1118
*
9XWO|1|A|A|1155
9XWO|1|A|G|1156
9XWO|1|A|A|1157
9XWO|1|A|C|1158
*
9XWO|1|A|G|1181
9XWO|1|A|G|1182
9XWO|1|A|U|1183
9XWO|1|A|G|1184
9XWO|1|A|G|1185

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14