J3_9XWO_030
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9XWO|1|a|A|2388, 9XWO|1|a|U|2390, 9XWO|1|a|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9XWO_030 not in the Motif Atlas
- Homologous match to J3_7A0S_020
- Geometric discrepancy: 0.1792
- The information below is about J3_7A0S_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.3
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9XWO|1|a|G|2282
9XWO|1|a|C|2283
9XWO|1|a|A|2284
*
9XWO|1|a|U|2384
9XWO|1|a|C|2385
9XWO|1|a|A|2386
9XWO|1|a|U|2387
9XWO|1|a|A|2388
9XWO|1|a|G|2389
9XWO|1|a|U|2390
9XWO|1|a|G|2391
9XWO|1|a|A|2392
9XWO|1|a|U|2393
9XWO|1|a|C|2394
9XWO|1|a|C|2395
*
9XWO|1|a|G|2421
9XWO|1|a|C|2422
9XWO|1|a|U|2423
9XWO|1|a|C|2424
9XWO|1|a|A|2425
9XWO|1|a|A|2426
9XWO|1|a|C|2427
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL33
- Chain 2
- Large ribosomal subunit protein bL35
- Chain 5
- Transfer RNA; tRNA
- Chain k
- 50S ribosomal protein L15
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: