J3_9XWO_035
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 9XWO|1|a|U|2833, 9XWO|1|a|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9XWO|1|a|G|2812
9XWO|1|a|A|2813
9XWO|1|a|A|2814
9XWO|1|a|C|2815
*
9XWO|1|a|G|2831
9XWO|1|a|U|2832
9XWO|1|a|U|2833
9XWO|1|a|G|2834
9XWO|1|a|A|2835
9XWO|1|a|U|2836
*
9XWO|1|a|A|2882
9XWO|1|a|A|2883
9XWO|1|a|U|2884
9XWO|1|a|G|2885
9XWO|1|a|A|2886
9XWO|1|a|A|2887
9XWO|1|a|C|2888
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain m
- Large ribosomal subunit protein bL17
- Chain r
- 50S ribosomal protein L22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: