J3_9Y49_001

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAGCG*CGUACGG*CCCGG

Length

17 nucleotides

Bulged bases

9Y49|1|A5|C|159, 9Y49|1|A5|C|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y49|1|A5|C|112
9Y49|1|A5|A|113
9Y49|1|A5|G|114
9Y49|1|A5|C|115
9Y49|1|A5|G|116
*
9Y49|1|A5|C|155
9Y49|1|A5|G|156
9Y49|1|A5|U|157
9Y49|1|A5|A|158
9Y49|1|A5|C|159
9Y49|1|A5|G|160
9Y49|1|A5|G|161
*
9Y49|1|A5|C|274
9Y49|1|A5|C|275
9Y49|1|A5|C|276
9Y49|1|A5|G|277
9Y49|1|A5|G|278

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain CG

60S ribosomal protein L7a

Chain CL

60S ribosomal protein L13

Chain CN

60S ribosomal protein L15

Chain Ch

60S ribosomal protein L35

Chain Ci

60S ribosomal protein L36