J3_9Y49_004
3D structure
- PDB id
- 9Y49 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 9Y49|1|A5|G|409, 9Y49|1|A5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Y49|1|A5|U|380
9Y49|1|A5|U|381
9Y49|1|A5|G|382
9Y49|1|A5|A|383
9Y49|1|A5|A|384
9Y49|1|A5|A|385
9Y49|1|A5|A|386
9Y49|1|A5|G|387
9Y49|1|A5|A|388
9Y49|1|A5|A|389
9Y49|1|A5|C|390
*
9Y49|1|A5|G|401
9Y49|1|A5|A|402
9Y49|1|A5|G|403
9Y49|1|A5|U|404
9Y49|1|A5|U|405
9Y49|1|A5|C|406
9Y49|1|A5|A|407
9Y49|1|A5|A|408
9Y49|1|A5|G|409
9Y49|1|A5|A|410
9Y49|1|A5|G|411
9Y49|1|A5|G|412
9Y49|1|A5|G|413
9Y49|1|A5|C|414
9Y49|1|A5|G|415
*
9Y49|1|A8|C|19
9Y49|1|A8|A|20
Current chains
- Chain A5
- LSU-alpha rRNA (1722-MER)
- Chain A8
- 5.8S rRNA (157-MER)
Nearby chains
- Chain A6
- Large subunit ribosomal RNA; LSU rRNA
- Chain CC
- 60S ribosomal protein L4
- Chain CP
- 60S ribosomal protein L17
- Chain CY
- 60S ribosomal protein L26
- Chain Cl
- 60S ribosomal protein L39
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