J3_9Y49_005

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAGUC*GUGC*GAUG

Length

13 nucleotides

Bulged bases

9Y49|1|A5|A|452, 9Y49|1|A5|G|453, 9Y49|1|A5|U|454

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y49|1|A5|C|451
9Y49|1|A5|A|452
9Y49|1|A5|G|453
9Y49|1|A5|U|454
9Y49|1|A5|C|455
*
9Y49|1|A5|G|701
9Y49|1|A5|U|702
9Y49|1|A5|G|703
9Y49|1|A5|C|704
*
9Y49|1|A5|G|1293
9Y49|1|A5|A|1294
9Y49|1|A5|U|1295
9Y49|1|A5|G|1296

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CE

60S ribosomal protein L6

Chain Ce

60S ribosomal protein L32

Chain Cf

60S ribosomal protein L35a

Chain Cr

60S ribosomal protein L28