J3_9Y49_007

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUCUC*GCCGG*CACGCGACGGCGAAGCGAG

Length

29 nucleotides

Bulged bases

9Y49|1|A5|C|1272, 9Y49|1|A5|G|1273

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y49|1|A5|C|979
9Y49|1|A5|U|980
9Y49|1|A5|C|981
9Y49|1|A5|U|982
9Y49|1|A5|C|983
*
9Y49|1|A5|G|1070
9Y49|1|A5|C|1071
9Y49|1|A5|C|1072
9Y49|1|A5|G|1073
9Y49|1|A5|G|1074
*
9Y49|1|A5|C|1237
9Y49|1|A5|A|1238
9Y49|1|A5|C|1239
9Y49|1|A5|G|1240
9Y49|1|A5|C|1241
9Y49|1|A5|G|1242
9Y49|1|A5|A|1263
9Y49|1|A5|C|1264
9Y49|1|A5|G|1265
9Y49|1|A5|G|1266
9Y49|1|A5|C|1267
9Y49|1|A5|G|1268
9Y49|1|A5|A|1269
9Y49|1|A5|A|1270
9Y49|1|A5|G|1271
9Y49|1|A5|C|1272
9Y49|1|A5|G|1273
9Y49|1|A5|A|1274
9Y49|1|A5|G|1275

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CE

60S ribosomal protein L6

Chain CF

60S ribosomal protein L7