J3_9Y49_025

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCGGUUG*CCCUUCGU*ACGCAACGCACGUUCGUGG

Length

34 nucleotides

Bulged bases

9Y49|1|A6|G|4750, 9Y49|1|A6|C|4883, 9Y49|1|A6|C|4937, 9Y49|1|A6|A|4939, 9Y49|1|A6|C|4940, 9Y49|1|A6|G|4945, 9Y49|1|A6|U|4946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y49|1|A6|U|4748
9Y49|1|A6|C|4749
9Y49|1|A6|G|4750
9Y49|1|A6|G|4751
9Y49|1|A6|U|4752
9Y49|1|A6|U|4753
9Y49|1|A6|G|4754
*
9Y49|1|A6|C|4878
9Y49|1|A6|C|4879
9Y49|1|A6|C|4880
9Y49|1|A6|U|4881
9Y49|1|A6|U|4882
9Y49|1|A6|C|4883
9Y49|1|A6|G|4884
9Y49|1|A6|U|4885
*
9Y49|1|A6|A|4934
9Y49|1|A6|C|4935
9Y49|1|A6|G|4936
9Y49|1|A6|C|4937
9Y49|1|A6|A|4938
9Y49|1|A6|A|4939
9Y49|1|A6|C|4940
9Y49|1|A6|G|4941
9Y49|1|A6|C|4942
9Y49|1|A6|A|4943
9Y49|1|A6|C|4944
9Y49|1|A6|G|4945
9Y49|1|A6|U|4946
9Y49|1|A6|U|4947
9Y49|1|A6|C|4948
9Y49|1|A6|G|4949
9Y49|1|A6|U|4950
9Y49|1|A6|G|4951
9Y49|1|A6|G|4952

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CE

60S ribosomal protein L6

Chain CM

60S ribosomal protein L14

Chain CO

60S ribosomal protein L13a

Chain Cf

60S ribosomal protein L35a